I've opened those two BIOS features and I am quoting only the items with disabled listed.
All "advanced chipset features" are enabled.
"Integrated peripherals"
The "onboard devices config was entered and the onboard Lan option rom is disabled.(I have external modem?)
the i/o devices config.
IR function = disabled
Parallel port = disabled
Sata devices config
serial -ATA devices 0/1/2 option box looks to me it is giving the option to disable.
nvidia raid function = disabled.
The present troubles occurred I recall was because I accepted an update at the msi motherboard and a patch was suggested and I accepted, however it did say something like the file already existed and should it overwrite the file, I said yes, my boot up troubles started from that point.
BIOS is stressfull but nicer when someone is holding your hand.:)